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the spartan II super soldiers were mostly all killed by the covenant or otherwise,most of the spartans were killed on Reach when it fell to the covenant. As far as we know there are only a few actually alive and missing in action instead of killed in action, the ones that are alive are kelly, linda, fred who are trapped in the forerunner shield world(halo:ghosts of onyx),there is spartan red team drifting in the UNSC Spirit Of Fire(Halo Wars), spartan black team from Halo:blood line and there is spartan grey team still out fighting covenant somewhere in the universe( halo: the cole protocol) and finally Master chief in his half of the ship headed to an unknown planet

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